BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016E10SP1|AL427030
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1594 0.0
>3x_Contig1780
Length = 27883
Score = 1594 bits (792), Expect = 0.0
Identities = 859/890 (96%), Gaps = 3/890 (0%)
Strand = Plus / Plus
Query: 1 accgtatggaggatcacaaaggatcgtatcaatgacaaagtcctttctcaatgcattatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5275 accgtatggaggatcacaaaggatcgtatcaatgacaaagtcctttctcaatgcattatg 5334
Query: 61 cgtaadatccattgtcatgacgtccaggaattggatagactctttatdatacttgakatt 120
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 5335 cgtaaaatccattgtcatgacgtccaggaattggatagactctttataatacttgaaatt 5394
Query: 121 tgccttgatagtttgttgtcccttccctctgatcatcctaccatcaatatcagaccctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5395 tgccttgatagtttgttgtcccttccctctgatcatcctaccatcaatatcagaccctaa 5454
Query: 181 gacaagagcaccataatggccaccagccaccaggaatgaaccagtaccaacgaatgggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5455 gacaagagcaccataatggccaccagccaccaggaatgaaccagtaccaacgaatggatc 5514
Query: 241 atacattatdtgtgctggttttwcctgtgcwatatttgcacttaccagtgataattcagc 300
||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 5515 atacattatatgtgctggttttacctgtgcaatatttgcacttaccagtgataattcagc 5574
Query: 301 ttcadatgatgtggttcctttgtdaggtctctttttcaagtcatacttctctdgtgcacc 360
|||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 5575 ttcaaatgatgtggttcctttgtaaggtctctttttcaagtcatacttctctagtgcacc 5634
Query: 361 ccgtgc-cgattcgcttagttgadttarccttccgaratagatcttttctgggacctcac 419
|||||| ||| |||||||||||| ||| |||||||| ||||||||||||||| |||||||
Sbjct: 5635 ccgtgcacga-tcgcttagttgaattaaccttccgaaatagatcttttctggaacctcac 5693
Query: 420 ccccgatattttcgctgatagctttgtattcttcaatdaccgtraaakcttcatccggat 479
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct: 5694 ccccgatattttcgctgatagctttgtattcttcaataaccgtaaaaacttcatccggat 5753
Query: 480 ttttcattttgatgggtcccttcaactcaaggtactgggragrttcartggttgtcactc 539
|||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct: 5754 ttttcattttgatgggtcccttcaactcaaggtactggaaagattcaatggttgtcactc 5813
Query: 540 tcgtagaaatrtcctgtttcgcgttaccaccaaacttttcagattcagacttgagactct 599
|||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct: 5814 tcgtagaaatatcctgtttcgcgttaccaccaaacttttcaaattcaaacttgaaactct 5873
Query: 600 ttctttcatttgcgctcttatrctgttcagactcgggatgagcttggacactcttgtgc- 658
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 5874 ttctttcatttgcgctcttatactgttcaaactcgggatgagcttggacactcttgtgca 5933
Query: 659 acgactcataagtattaccttcaccccagtactcataaatggctcttgtaagcaccgatc 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5934 acgactcataagtattaccttcaccccagtactcataaatggctcttgtaagcaccgatc 5993
Query: 719 tcctaatccaatcactggcttgcttatcattttccaaggtaactatcatgaatggtgaat 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5994 tcctaatccaatcactggcttgcttatcattttccaaggtaactatcatgaatggtgaat 6053
Query: 779 cgacagaataactcgaaaagtcgacatcaactccatgcagatccgctagtgattccaatt 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6054 cgacagaataactcgaaaagtcgacatcaactccatgcagatccgctagtgattccaatt 6113
Query: 839 ctgctagacggraatttaagtgcacctgcaccataaacaaaagataccgc 888
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 ctgctagacggaaatttaagtgcacctgcaccataaacaaaagataccgc 6163
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.713 1.32
Gapped
Lambda K H
1.40 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4674
Number of Sequences: 1807
Number of extensions: 4674
Number of successful extensions: 103
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.6 bits)
S2: 50 (101.1 bits)